on the new paper: M. R. Winter, M. Morgulis, T. Gildor, Andrew R. Cohen, S. Ben-Tabou de-Leon, Calcium-vesicles perform active diffusion in the sea urchin embryo during larval biomineralization, PLOS Computational Biology, to appear (2021). Also, bioarxiv:: https://doi.org/10.1101/2020.08.14.244053
“Spatio-temporal Control of ERK Pulse Frequency Coordinates Fate Decisions during Mammary Acinar Morphogenesis”
very cool work. great job by Pascal Ender, Olivier Pertz and co. Beautiful 3-D movies showing ERK signaling activity in live synthetic breast organoids can be seen here: https://leverjs.net/mcf10a_3d. source code at https://leverjs.net/git.
“A spatiotemporal map of signalling processes controlling human stem cell renewal and differentiation”
PERTZ Olivier (SWITZERLAND)
Institute of Cell Biology – University of Bern – Bern – SWITZERLAND
School of Cellular and Molecular Medicine – University of Bristol – Bristol – UK
COHEN Andrew (USA)
Dept. of Electrical & Computer Engineering – Drexel University – Philadelphia – USA
congratulations Eric and Mark!!
Hydra Image Processor: 5-D GPU Image Analysis Library with MATLAB and Python Wrappers. Eric Wait, Mark Winter, and Andrew R. Cohen. Bioinformatics. In press, 2019.
Mark Winter, Walter Mankowski, Eric Wait, Edgar Cardenas De La Hoz, Angeline Aguinaldo and Andrew R. Cohen*, Separating Touching Cells using Pixel Replicated Elliptical Shape Models, IEEE Transactions on Medical Imaging, in press, 2018.
by M. Cecilia Caino, Jae Ho Seo, Angeline Aguinaldo, Eric Wait, Kelly Bryant, Andrew Kossenkov, James Hayden, Valentina Vaira, Annamaria Morotti, Stefano Ferrero, Silvano Bosari, Dmitry Gabrilovich, Lucia Languino, Andrew Cohen, and Dario Altieri
(to appear) Nature Communications.
Congratulations Edgar and Mark!
LEVER software paper is in press! Look for a new LEVER website, and a new code release, coming soon!
Accepted for publication –
R. Joshi, W. Mankowski, M. Winter, J. S. Saini, T. A. Blenkinsop, J. H. Stern, S. Temple* and A. R. Cohen*, Automated measurement of cobblestone morphology for characterizing stem cell-derived retinal pigment epithelial cell cultures, Journal of Ocular Pharmacology and Therapeutics, Special Issue: Cell-based Therapies for Eye Disease. 2016 â€“ In Press.
Congratulations to Amber Jolly on the new paper. This work dates back to 2010 – it was a long time coming :)!